Home Categories Regulon list Genes not in 168 Interaction with Plants Reference Resourses
Login


sigD

FliA/WhiG family RNA polymerase sigma factor
genesigD
locusRBAM_016310
feature typeCDS
productABS73994.1 FliA/WhiG family RNA polymerase sigma factor
synonyms
homologBSU16470
start1631612
stop1632376
direction+
length765
essential
protein detected in LBnot detected
Genomic Context

Functional category containing this gene/protein

CategoryInformation processing
Subcategory1RNA synthesis and degradation
Subcategory2transcription
Subcategory3sigma factors

Phenotypes of a mutant

plant-bacteria interaction

root colonization

Expression and Regulation

Operons
flgB-flgC-fliE-fliF-fliG-fliH-
Transcripts
Primary TSS1631586
Secondary TSS
Internal TSS
Antisense TSS

Sigma factors

SigA SigA SigD SigD

Protein regulator

CodY repression CodY repression DegU repression DegU regulation Spo0A repression Spo0A repression SwrAA/1 activation SwrAA/1 activation

Additional regulation

RNA regulation_mode

This gene is a member of the following regulons

Spo0A Regulon
The protein


Catalyzed reaction/ biological activity
E.C. number
Protein family
Domains
Effectors of protein activity
Refer to BSU16470
Structure
Refer to BSU16470
Malonylation
Acetylation
"K240,251"
Localization

Biological materials


Mutant
LacZ fusion
GFP fusion
FLAG-tag construct
Antibody
Additional information

References


Liu L, Wang G, Song L, Lv B, Liang W

Acetylome analysis reveals the involvement of lysine acetylation in biosynthesis of antibiotics in Bacillus amyloliquefaciens.

Sci Rep. 2016 Jan 29;6:20108. doi: 10.1038/srep20108;PMID:26822828

Dietel K, Beator B, Budiharjo A, Fan B, Borriss R

Bacterial Traits Involved in Colonization of Arabidopsis thaliana Roots by Bacillus amyloliquefaciens FZB42.

Plant Pathol J. 2013 Mar;29(1):59-66. doi: 10.5423/PPJ.OA.10.2012.0155;PMID:25288929